FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488859
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16300.3334294755747567No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15630.3197240922229109No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12370.25303819710795955No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11410.23340063290232968No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11040.22583198836474322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11000.22501375652284197No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9080.1857386281115823No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8690.17776086765304513No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6710.1372583914789336No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6660.13623560167655704No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG6240.127644167336594No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6190.12662137753421743No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5340.10923395089381602No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5150.10534734964478511No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5070.10371088596098262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)