FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564598
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56991.0093907523583152No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24430.43269724653647373No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT22000.38965777420394687No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21900.3878866025030198No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21590.38239597023014604No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC20500.3630901986900414No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17780.3149143284248262No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14540.25752836531479034No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14480.2564656622942341No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13550.23999376547561274No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC12490.2212193454457862No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC11790.20882114353929698No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11610.20563303447762835No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11110.19677717597299318No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10510.186150145767431No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10370.18367050538613316No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10150.17977392764409367No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8620.1526750006199101No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7590.13443193210036167No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7480.13248364322934195No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7170.12699301095646814No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6680.11831426962192568No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG6590.11672021509109136No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6360.11264652017895918No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6330.11211516866868108No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5900.10449913035469485No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC5810.10290507582386052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)