FastQCFastQC Report
Wed 31 May 2023
EGAF00007934731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564294
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53940.9558846984018968No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24990.4428542568235707No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT22490.3985511098824372No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22210.3935891574250302No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21710.3847285280368035No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC20200.3579694272843588No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19200.34024816850790546No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15490.2745022984472633No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14610.2589075907239843No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13920.24667992216823145No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC12300.2179714829503769No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11740.20804757803556304No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC11130.19723761018192645No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10990.19475663395322296No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10770.1908579570224032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10720.18997189408358053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.17650373741347594No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8820.15630150240831905No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7530.13344107858669416No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7450.1320233778845779No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7000.12404881143517386No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6850.12139062261870585No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6730.11926407156553143No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG6310.111821142879421No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6020.10668197783424951No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5810.1029605134911943No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5780.1024288757279007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)