FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519852
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA48020.9237244446496311No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA41970.8073451674707417No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG39390.757715657533298No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG32450.6242161230504066No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG27880.5363064872309811No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG22250.42800643260004767No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21930.42185083446827176No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT20290.3903033940429199No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA16080.30931880612174234No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG15560.2993159591576064No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG12440.23929887737279074No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGCTGG11690.22487169425144082No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT11580.2227557073936428No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG11460.2204473580942268No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11430.21987027076937282No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9870.18986172987696498No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9800.188515192785639No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9680.186206843486223No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9650.185629756161369No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9500.18274431953709902No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9170.17639635896370504No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9140.17581927163885105No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG8420.16196917584235512No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8310.15985318898455714No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8170.15716011480190517No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG8020.15427467817763518No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7930.15254341620307318No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7800.15004270446203918No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT7540.1450412809799712No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6960.13388425936612727No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6930.1333071720412733No Hit
GAACGGACGAGTCGTCTTGCGCGGTTTTTTACGCGGAGACAGTT6690.1286904734424413No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6390.12291960019390136No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6300.12118833821933934No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6290.12099597577772134No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6200.11926471380315935No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6020.11580218985403538No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5970.11484037764594539No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5940.11426329032109138No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5650.10868477951416942No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5520.10618406777313542No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5480.10541461800666344No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA5260.10118264429106746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)