FastQCFastQC Report
Wed 31 May 2023
EGAF00007934739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390412
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25370.6498263373052058No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24230.6206264151716648No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18580.47590750284315037No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17850.4572093070909705No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16970.4346690163212197No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15740.4031638371771359No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12830.32862719383625505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11560.29609745602081905No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10760.27560628259377273No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9110.23334323740048973No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8280.2120836449699292No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8060.20644857227749147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7670.1964591252318064No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7510.19236089054639716No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7480.19159247154288292No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7310.18723809718963555No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6700.17161357745151276No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.1675153427661035No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.15752589572041845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6100.15624519738122805No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5970.152915381699333No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5970.152915381699333No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5330.13652244295769597No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4930.1262768562441728No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4780.12243476122660166No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4450.11398215218794505No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4150.10629796215280268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)