FastQCFastQC Report
Sun 21 May 2023
EGAF00007934741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences343731
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33850.9847817042978376No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20410.5937782742900698No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19990.5815594171023272No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16830.4896270630231198No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16530.48089930788901786No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15970.4646074983053609No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13250.38547585175616983No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10160.29557997387491963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9890.2877249942542279No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8860.25775970162714446No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8020.23332198725165898No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7940.23099458588256516No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7490.2179029531814122No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6940.20190206876889194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.19171968777910633No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6260.18211915713159418No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6030.17542787819544936No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5670.16495457203452701No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5620.16349994617884334No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5580.1623362454942964No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5100.14837183727973327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4970.14458981005495575No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4800.13964408214563132No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3920.11404266708559892No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3890.11316989157218872No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC3670.10676953780718061No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT3580.10415121126695004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)