FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533584
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47080.8823353024078683No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13050.24457255090107652No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12740.23876278149269842No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10370.19434615730606614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9440.17691684908093197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9300.17429308225134188No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9050.16960778434135956No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8480.15892530510659988No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8300.15555189061141264No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8300.15555189061141264No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7970.149367297370236No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7460.13980928963387207No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6480.12144292182674143No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6350.11900656691355063No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5840.10944855917718672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)