FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519364
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49410.9513558891259309No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42490.818116003419567No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12720.24491493441979034No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12600.24260441617054707No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10030.19312081699925293No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8760.16866783219476128No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8720.1678976594450135No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8190.15769287051085557No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7960.15326437719980593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7670.1476806247641346No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7360.14171178595358938No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7130.13728329264253972No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5740.11051978958880476No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5670.10917198727674617No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5250.1010851734043946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)