FastQCFastQC Report
Wed 31 May 2023
EGAF00007934749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24930.446941596404388No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15940.2857701181983933No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15690.28128815273104085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15320.2746548438393592No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11930.21387939210205975No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10650.19093172890921511No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10550.1891389427222741No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.1785615042193223No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9500.17031468775939373No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9400.16852190157245278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9360.16780478709767638No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9010.1615300354433829No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8960.16063364234991243No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8620.15453816931431308No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8570.15364177622084257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7010.12567431170456317No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6290.11276625115858809No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.10200953403694216No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.10021674785000118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)