FastQCFastQC Report
Wed 31 May 2023
EGAF00007934751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512673
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24040.4689148833662003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19310.3766533443344978No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18350.35792795797711213No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18080.35266144306409736No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16500.32184257801756677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11690.2280205901227488No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11600.22626508515174393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11350.22138868245450802No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11330.22099857023872918No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10380.2024682399892329No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8670.16911364554013963No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7990.15584983020365809No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7740.15097342750642223No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7440.14512174426973917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6830.1332233216884837No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6690.1304925361780316No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.12951725563858443No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6330.12347051629401197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6090.11878916970466553No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5980.11664355251788178No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.11352265479165081No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5740.11196220592853534No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5600.10923142041808327No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5570.10864625209441496No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5550.10825613987863608No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5380.10494018604451572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)