FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512048
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22820.4456613442489767No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18970.37047308064868917No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18620.363637783957754No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18200.3554354279286317No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16590.32399306315032966No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11420.2230259663156579No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11160.2179483173452489No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11090.21658125800706182No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10350.20212948786051307No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10350.20212948786051307No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.1984188982282911No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7840.15311064587694906No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7350.1435412305096397No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7170.14002593506858732No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6880.13436240352466955No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6710.13104240227478672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6660.13006593131893884No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6520.12733181264256477No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6200.12108239852513826No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6160.12030122176045996No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6100.11912945661344249No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5810.11346592506952471No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5800.11327063087835515No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5610.10956004124613318No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.10838827609911571No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5310.10370121551104584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)