FastQCFastQC Report
Sun 21 May 2023
EGAF00007934755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522966
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59241.1327696255588318No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA48000.917841695253611No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31110.5948761487362467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20010.3826252567088491No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16400.3135959125449838No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14380.2749700745363943No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11290.21588401540444313No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11240.21492793030522062No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10060.19236432196356934No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9220.17630209229663113No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.1717128838203631No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8850.16922706256238457No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8470.16196081580829347No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7160.13691138620866367No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6920.1323221777323956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.12811540329581655No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6600.12620323309737155No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6480.1239086288592375No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6440.1231437607798595No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6410.12257010972032598No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6300.12046672250203645No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6240.11931942038296946No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6190.11836333528374694No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6040.1154950799860794No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6010.1149214289265459No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5970.11415656084716788No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5910.11300925872810086No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5570.10650788005338781No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5440.10402205879540927No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5430.10383084177556474No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5390.10306597369618675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)