FastQCFastQC Report
Sun 21 May 2023
EGAF00007934757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511980
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63421.2387202625102542No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA46260.9035509199578108No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41120.8031563732958319No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29970.5853744286886207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18370.35880307824524393No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16570.32364545490058205No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13770.2689558185866635No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11280.22032110629321455No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11100.21680534395874837No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9960.19453884917379585No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8680.16953787257314737No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8170.1595765459588265No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8110.1584046251806711No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7080.1382866518223368No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6950.13574749013633344No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6660.13008320637524903No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6580.12852064533770852No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6490.1267627641704754No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6440.12578616352201258No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6410.12520020313293487No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6180.12070784015000585No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6040.11797335833430994No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5830.11387163561076605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5750.11230907457322552No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5610.10957459275752958No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5530.10801203171998906No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5490.1072307512012188No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5440.10625415055275597No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5130.10019922653228641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)