FastQCFastQC Report
Wed 31 May 2023
EGAF00007934761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459785
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18470.4017094946551105No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9130.1985710712615679No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8010.17421185989103602No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7810.16986200071772675No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7380.16050980349511185No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7350.15985732461911545No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7320.15920484574311905No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6430.13984797242189284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6340.13789053579390367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6200.13484563437258718No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6180.13441064845525627No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5480.11918614134867384No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4650.10113422577944038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)