FastQCFastQC Report
Wed 31 May 2023
EGAF00007934762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513503
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC26800.5219054221689066No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25890.5041840067146638No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24060.4685464349770108No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21640.4214191543184752No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT20510.3994134406225475No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19950.38850795418916734No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG19050.37098127956409216No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG18610.36241268308072205No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16760.32638562968473406No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT15770.30710628759715136No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG15210.2962008011637712No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT14940.2909427987762486No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13960.27185819751783336No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG13160.2562789311844332No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11870.23115736422182537No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11570.2253151393468003No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10770.2097358730134001No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9320.18149845278411225No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8470.16494548230487455No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8380.16319281484236703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8200.159687479917352No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8200.159687479917352No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7990.15559792250483445No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7300.14216080529227676No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6960.13553961710058168No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6350.12366042652136404No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6190.12054457325468401No Hit
CTGCAGGTCTGGAAATTCGTCATCCTGGCACATGTGTACAACTG6140.11957086910884648No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5780.1125601992588164No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5780.1125601992588164No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5580.10866538267546635No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5350.1041863436046138No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5320.1036021211171113No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5310.1034073802879438No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT5310.1034073802879438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)