FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513503
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51260.9982414903126174No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42800.8334907488369104No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC25920.5047682292021664No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25490.4963943735479637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24390.4749728823395384No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23640.46036732015197573No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20850.40603462881424257No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT20330.39590810569753243No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20030.39006588082250737No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG18440.3591020889848745No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT16620.32365925807638907No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT16110.3137274757888464No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15530.30243250769713126No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC15280.29756398696794367No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13510.2630948602052958No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT12230.23816803407185547No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11640.22667832515097286No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10860.21148854047590765No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9070.17662993205492472No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8930.17390356044657967No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT8760.17059296635073212No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8300.161634888209027No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8190.15949273908818448No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7940.15462421835899692No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7330.1427450277797793No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6980.13592909875891668No Hit
GAAGTGCTGGATCTGTCCATCCACGGCCGCC6690.13028161471305913No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6410.12482887149636906No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6250.12171301822968901No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC6230.12132353657135402No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6120.11918138745051149No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5850.11392338506298891No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5820.11333916257548643No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG5760.1121707176004814No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5670.11041805013797387No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5470.10652323355462383No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5320.1036021211171113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)