FastQCFastQC Report
Wed 31 May 2023
EGAF00007934764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532768
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC26880.504534806895309No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26750.5020947204036279No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24750.46455492822391736No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22400.42044567241275754No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21780.4088083368370472No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21390.4014880773620037No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG19910.373708631149018No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG19740.37051774881374255No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16710.31364496366148115No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT16080.3018199291248724No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT15880.29806594990690133No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG15680.2943119706889303No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14060.26390473902336475No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG13580.25489518890023427No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12530.23518679800588624No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11670.21904468736861074No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11440.214727611267944No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10210.19164063907742207No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9310.17474773259655235No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8660.16254730013814642No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8140.1527869541714217No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7910.148469878070755No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7530.14133731755661003No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7530.14133731755661003No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6750.12669679860652291No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6690.1255706048411316No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6300.11825034536608804No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6290.1180626464051895No Hit
CTGCAGGTCTGGAAATTCGTCATCCTGGCACATGTGTACAACTG6170.11581025887440688No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5930.11130548381284161No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5670.10642531082947924No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5600.10511141810318939No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5550.10417292329869662No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT5540.10398522433779807No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5520.10360982641600097No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5510.10342212745510242No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5440.10210823472881253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)