FastQCFastQC Report
Wed 31 May 2023
EGAF00007934765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532768
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA54281.0188299597573427No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27710.5201138206498889No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26780.5026578172863235No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC26620.4996546339119467No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25660.4816355336656857No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22380.4200702744909604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22200.4166916931947865No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT21510.4037404648927863No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG20320.3814042885458586No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17300.32471920235449575No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT16860.3164604480749595No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC16670.3128941678178869No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15730.29525046549342304No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13130.24644873565979938No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT12940.2428824554027269No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12160.22824193645263982No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12040.22598954892185716No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9830.18450807856327706No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9740.1828187879151901No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9150.1717445492221755No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT8970.16836596792600156No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8820.16555048351252327No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8660.16254730013814642No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8440.15841792299837829No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7140.13401705808156644No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6950.13045077782449396No Hit
GAAGTGCTGGATCTGTCCATCCACGGCCGCC6890.12932458405910263No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6730.1263214006847258No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6640.12463211003663882No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6640.12463211003663882No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC6320.11862574328788515No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6030.11318247342182713No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG6020.11299477446092858No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.1098038921256532No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5820.10924079524295754No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5720.107363805633972No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5420.10173283680701543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)