FastQCFastQC Report
Wed 31 May 2023
EGAF00007934775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472852
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40350.8533325437980595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16210.342813396157783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13010.2751389441093619No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8860.18737363910906582No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7270.1537478957475066No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7030.14867231184387505No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6660.14084745332577636No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6230.13175369883176977No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5480.11589249913292107No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5450.11525805114496714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)