FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480456
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39960.8317098756181628No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20740.43167324375176913No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18330.3815125630650882No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13680.28472950696838006No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10390.21625289308490267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10310.21458780824883025No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9760.20314035000083253No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9040.18815458647618097No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8430.17545831460112893No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7740.1610969578900045No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6920.14402983832026242No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6850.14257288908869908No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6510.13549627853539137No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6470.13466373611735516No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6410.13341492249030087No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6110.1271708543550294No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5990.12467322710092078No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5860.12196746424230315No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5440.11322576885292306No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5380.11197695522586876No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5360.11156068401685065No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5230.108854921158233No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5210.10843864994921491No Hit

[OK]Adapter Content

Adapter graph