FastQCFastQC Report
Sun 21 May 2023
EGAF00007934778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485506
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC18080.37239498584981445No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10240.21091397428662056No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10060.20720650208236355No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8930.18393181546675016No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG8860.1824900207206502No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8270.1703377507178078No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7970.1641586303773795No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7820.16106907020716532No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7720.15900936342702252No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7070.14562126935609446No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7050.14520932800006592No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6850.14108991443978036No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6810.14026603172772326No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6380.1314092925731093No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6140.12646599630076663No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5870.12090478799438112No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5470.11266596087380999No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5040.10380922171919606No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG5030.10360325104118177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)