FastQCFastQC Report
Sun 21 May 2023
EGAF00007934779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485506
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39050.8043154976457553No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21990.4529295209533971No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18070.37218901517180014No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13490.27785444464126086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10800.2224483322554201No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9970.20535276598023505No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9750.20082141106392096No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8610.17734075377029326No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8330.1715735747858935No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8150.16786610258163648No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7210.14850485884829434No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7060.14541529867808017No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7020.14459141596602307No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6940.14294365054190886No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6630.13655855952346624No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6610.1361466181674377No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5860.12069881731636685No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5850.12049284663835257No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5740.1182271691801955No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5670.11678537443409556No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5570.11472566765395278No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5390.11101819544969578No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5360.11040028341565294No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5030.10360325104118177No Hit

[OK]Adapter Content

Adapter graph