FastQCFastQC Report
Wed 31 May 2023
EGAF00007934782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences581027
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27840.4791515712694935No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24320.4185691886951897No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23510.4046283563414437No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19830.34129222910467155No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16500.28397991831704894No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16470.28346359119283615No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15150.26074519772747223No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14940.2571309078579825No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14580.25093498236742867No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13680.23544516864104423No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12460.214447865589723No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12120.20859615818197777No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11440.19689274336648727No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10570.1819192567643156No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10020.17245325948708065No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9470.16298726220984566No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9110.15679133671929185No Hit
CAGAGAGGTGGCCTCGTTTTCCAGTTTCAGGTTGTACGGGTTAA8960.1542097010982278No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8840.15214439260137655No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT8690.14956275698031243No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8650.14887432081469534No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8510.14646479423503556No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC8130.1399246506616732No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8130.1399246506616732No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8040.13837566928903478No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7670.1320076347570767No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7290.12546749118371434No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7260.12495116405950155No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6610.11376407636822385No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6380.10980556841592559No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6320.10877291416749996No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6230.1072239327948615No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA6150.10584706046362732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)