FastQCFastQC Report
Sun 21 May 2023
EGAF00007934783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences581027
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46940.8078798403516533No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37940.6529817030878083No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24030.41357802649446584No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24000.413061699370253No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21180.36452694969424826No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18840.3242534340056486No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18000.30979627452768976No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17910.3082472931550513No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17820.30669831178241286No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16920.2912084980560284No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16900.29086427997321984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15790.2717601763773456No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12860.22133222724589394No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12500.21513630175534013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11820.20343288693984962No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10820.1862219827994224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10590.18226347484712413No Hit
GTCGGTGACGGTGAGCCAACGACCGATGCTA9910.17056006003163365No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9900.17038795099022938No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9330.16057773563018585No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9280.15971719042316448No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9250.1592008632989517No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9220.15868453617473888No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9160.15765188192631324No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC9000.15489813726384488No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG8970.15438181013963206No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8080.13906410545465187No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8020.13803145120622623No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7590.1306307624258425No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC7460.12839334488758697No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7320.12598381830792718No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6970.11996000185877764No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6510.11204298595418112No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6360.10946135033311705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)