FastQCFastQC Report
Sun 21 May 2023
EGAF00007934785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences587012
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46120.785673887416271No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37300.6354214223900022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25180.4289520486804359No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24710.42094539804978437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22370.38108249916526404No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19100.32537665328817805No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18050.3074894550707652No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18030.3071487465332906No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17830.3037416611585453No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17630.3003345757838No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17070.2907947367345131No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16380.2790402921916417No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14100.2401995189195451No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12470.2124317731153707No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11710.1994848486913385No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11680.1989737858851267No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11370.19369280355427146No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10210.17393170838074862No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9580.16319938945030085No Hit
GTCGGTGACGGTGAGCCAACGACCGATGCTA9430.16064407541924186No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9400.16013301261303006No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9370.15962194980681826No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9250.15757769858197107No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9240.1574073443132338No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG9020.15365955040101395No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8900.15161529917616676No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8390.14292723147056619No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8250.14054227170824446No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8140.13866837475213456No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7580.12912853570284763No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7270.1238475533719924No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC6870.11703338262250176No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6540.11141169175417198No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6440.10970814906679932No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6040.10289397831730868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)