FastQCFastQC Report
Wed 31 May 2023
EGAF00007934787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551869
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44820.8121492600599056No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43490.788049337795745No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC27860.5048299505860993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21860.3961084967628187No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20140.36494168000014493No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18110.3281575881232684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12130.21979853914606545No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7490.13572061485606185No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC7090.1284725179345098No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6740.12213043312815179No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6710.1215868258590354No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG6230.11288910955317294No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6120.11089588289974614No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5760.1043725956703493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)