FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546156
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16470.30156219102234527No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14110.25835109382667226No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12810.23454837079515742No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10200.18675982686265463No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA9320.17064721434901384No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7610.1393374786690982No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7330.13421073832384886No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7290.1334783468459561No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7200.1318304660206974No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6800.12450655124176975No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6730.12322486615545741No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5520.10107002394920132No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5520.10107002394920132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)