FastQCFastQC Report
Wed 31 May 2023
EGAF00007934791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546156
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44630.8171657914588506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36700.6719691809666103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12540.22960472831938128No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9990.1829147716037176No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9110.1668021590900768No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA9080.16625286548165727No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7990.14629519770907948No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7880.14428112114487435No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7510.1375064999743663No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7290.1334783468459561No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7230.13237975962911694No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7180.131464270281751No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7080.12963329158701908No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7030.12871780223965315No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6900.12633752993650166No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG6460.11828122367968127No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5810.10637986216392387No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5510.10088692607972814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)