FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543823
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20290.37309933562942355No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18810.3458845984814912No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17240.3170149111015901No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15940.2931100744175954No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA12710.23371574942582424No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12340.22691206513884116No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11890.21863731397899683No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11850.21790178054256626No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11490.2112819796146908No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11340.20852372922807605No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11310.2079720791507531No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10660.19601966080875577No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9170.16862104030171582No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8430.15501367172774963No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8230.15133600454559662No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC7130.13110883504375503No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6680.12283408388391076No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6340.11658204967425062No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5870.10793953179619103No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5850.10757176507797575No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.10591681484600687No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5590.10279079774117683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)