FastQCFastQC Report
Sun 21 May 2023
EGAF00007934793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543823
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44320.8149710475651085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40610.74675032133617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24380.4483076295044528No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22800.41925405876544386No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG22530.41428920806953734No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21550.39626863887698754No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13580.24971360166818984No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA12940.23794506668530016No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12920.23757729996708488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12100.22249886452025752No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11030.20282334509573885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11030.20282334509573885No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9740.1791023917708519No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9180.16880492366082345No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7420.13644145245787692No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC7330.13478650222590807No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7260.1334993187121545No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6350.11676593303335829No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6300.11584651623782002No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6170.11345603256942058No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6150.11308826585120525No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.11014613210548285No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5580.10260691438206916No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5560.10223914766385386No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5500.10113584750920795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)