FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556689
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT43380.7792501737954226No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC41950.7535625816209769No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC41930.7532033145975581No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG30000.5389005351282313No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC23510.422318386028824No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22550.4050735689047206No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21860.39267885659677126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20510.3684283325160009No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12580.22597895773043836No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9530.17119073665906817No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8940.16059235946821296No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8730.15682005572231533No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG8360.15017361578906716No Hit
AGAAGCAACCGCGCTAACCGCGTCTTCCAGCTGCAGGGTCTGCT7560.13580293485231432No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7500.13472513378205783No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6950.12484529063804027No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6510.1169414161228262No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6420.1153247145174415No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC6380.11460618047060386No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6330.11370801291205682No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6330.11370801291205682No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6190.11119314374812507No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5980.10742084000222746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)