FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556689
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA97221.7463970008388885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA58091.0434910695199653No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA54570.9802600733982529No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47620.8554147827602125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22050.39609189331925004No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13190.2369366019447124No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9970.17909461117428224No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9320.16741843291317055No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.16149052702676No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT8930.16041272595650355No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8020.1440660763909472No Hit
ATTGACACTATGAAATCCATGCAGCGTGATG7940.1426290082972719No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7900.14191047425043427No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7250.1302342959893226No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6960.1250249241497497No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6670.11981555231017679No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6610.11873775123992032No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6600.11855811772821091No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6560.11783958368137327No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6190.11119314374812507No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5700.10239110167436397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)