FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539335
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA92491.714889632603113No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA55141.0223701410069808No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA50060.9281800736091669No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49960.9263259384241705No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43870.8134091056578936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19700.36526463144427856No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13000.24103757404952394No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9780.18133442109264186No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8620.15982645294668435No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT8480.15723066368768945No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7590.14072886054122205No Hit
ATTGACACTATGAAATCCATGCAGCGTGATG7430.13776224424522793No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7350.13627893609723085No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7090.13145818461624037No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6590.12218750869125868No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6570.1218166816542594No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6540.1212604410987605No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6230.11551262202527186No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6230.11551262202527186No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6090.11291683276627698No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6000.11124811109978028No Hit

[OK]Adapter Content

Adapter graph