FastQCFastQC Report
Wed 31 May 2023
EGAF00007934798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546928
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9830.17973115291226632No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8570.15669338560102974No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8040.147002896176462No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7520.13749524617499925No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7310.13365561828979317No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC6030.11025217213234649No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5990.10952081443992628No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5780.10568118655472018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)