FastQCFastQC Report
Wed 31 May 2023
EGAF00007934799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546928
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12620.23074335195857593No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10890.19911213176140186No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9680.17698856156569057No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9590.17534300675774508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8620.157607582716555No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7850.143528947137466No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7740.1415177134833104No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7070.12926747213527193No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC6380.11665155194102331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)