FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560632
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG16080.2868191612323235No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14250.2541774283308837No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12780.2279570199346452No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT12480.2226059161803108No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12240.2183250331768433No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11900.21226044892193097No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9850.17569457326731258No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9710.1731973915152899No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9560.1705218396381227No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA9210.1642788852580659No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8970.15999800225459837No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8110.1446581714921731No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7850.14002054823841664No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7700.13734499636124944No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6960.12414560710055794No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6580.11736754234506772No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6280.1120164385907333No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6220.11094621783986644No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5940.105951854335821No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5860.10452489333466516No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5640.10060075058148661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)