FastQCFastQC Report
Sun 21 May 2023
EGAF00007934803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560632
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22030.392949385693289No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21220.3785014055565862No Hit
ATGTCCAACATGGACATCGATGGTATTAACA16260.2900298234849242No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13130.23419997431470196No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13030.23241627306325716No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG12970.2313460523123903No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12870.2295623510609455No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10930.19495854678291644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10690.19067766377944892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9550.1703434695129782No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC9360.16695443713523309No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9190.16392214500777694No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9100.16231681388147662No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8840.15767919062772015No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8100.14447980136702865No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7760.13841521711211632No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.1262860486022917No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6840.12200516559882418No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6790.12111331497310178No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6710.11968635397194595No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6600.11772428259535667No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6520.11629732159420082No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6310.11255154896616675No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5900.1052383738352431No Hit

[OK]Adapter Content

Adapter graph