FastQCFastQC Report
Sun 21 May 2023
EGAF00007934804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544321
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10030.18426626935209187No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9940.1826128332362705No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8960.16460875108621567No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7140.1311725985218281No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6470.11886368521515796No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6250.11482195248759464No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6190.11371966174371373No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5870.10784077777634887No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5830.10710591728042827No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5830.10710591728042827No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5670.10416647529674584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)