FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544321
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13980.2568337433242517No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10510.19308459530313915No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.1736107921612431No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8910.1636901754663149No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7930.14568609331626006No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6860.12602857505038387No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6790.12474256918252281No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6030.1107802197600313No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5940.10912678364420993No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5930.10894306852022978No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5870.10784077777634887No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5850.10747334752838858No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5780.10618734166052753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)