FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540931
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27810.5141136300193555No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23780.43961244594966825No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT21000.38821956959390386No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13820.255485450085131No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12920.23884746853110655No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12360.22849494667526912No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12300.22738574790500082No Hit
GCCGTTTTCGATAAAACCGGCAATAGCACCGAAGATGCCACGGG10210.18874865740732183No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10190.18837892448389906No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10120.18708485925191937No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9520.17599287154923643No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8090.14955696752450867No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7800.14419584013487857No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7300.13495251704930944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7290.13476765058759804No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7250.13402818474075254No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6920.12792759150427688No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA6920.12792759150427688No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6900.12755785858085414No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6770.12515459457860614No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6770.12515459457860614No Hit
TTTCAGATCTGCCGCCTGGCCAGTACCTTCGGAGTTCTGGTGAC6610.12219673119122403No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6500.12016320011239881No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6350.11739020318672806No Hit
TTCAATAAAACCAGCGATTGCACCGAAGATACCACGGGTCTGCT6320.11683560380159391No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6180.11424747333763456No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5910.10925607887142723No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5780.10685281486917925No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5720.10574361609891096No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5620.10389495148179712No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5560.10278575271152883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)