FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561288
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA10020.1785179800744003No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9760.17388577699861746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9060.16141446102535595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8210.1462707202006813No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6980.12435683641909322No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6370.11348897535667965No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6020.1072533173700489No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.1038682458915922No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5790.10315559926454869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)