FastQCFastQC Report
Sun 21 May 2023
EGAF00007934813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences592013
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51380.8678863470903511No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47990.8106240910250282No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27540.4651924873271364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25480.4303959541428989No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25280.4270176499502545No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22030.37212020681978264No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17310.29239222787337443No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13890.23462322617915488No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13550.22888010905165934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11180.188847204368823No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC10300.17398266592118755No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9160.15472633202311437No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8730.14746297800892885No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8560.14459141944518109No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6970.11773390111365799No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6690.11300427524395579No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6260.10574092122977029No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6240.10540309081050585No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6040.10202478661786142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)