FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences598758
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24530.4096813737770519No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23620.39448324698793164No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18000.30062228813644243No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17090.2854241613473223No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16500.2755704307917389No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14400.24049783050915396No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13910.2323142237765508No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12940.21611402269364252No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12520.2090995026371255No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12120.20241900734520457No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC10960.18304557099863383No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10460.17469495188373266No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10200.17035262994398404No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8850.14780595833375085No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8360.13962235160114772No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8340.13928832683655165No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6660.1112302466104837No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6590.11006115993439754No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6330.10571883799464893No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6040.10087547890800623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)