FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences598758
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA52020.8687984127143186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47530.7938098530625061No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30960.517070335594681No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25380.42387742627238384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25040.418199005274251No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22470.375276823023659No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17430.2911025823454551No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13940.23281526092344484No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13550.22630177801382195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11460.191396190113535No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC11150.18621880626229628No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9870.16484122132814927No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8950.1494760821567311No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8570.1431296116294062No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6820.11390244472725208No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6460.10788999896452323No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6440.10755597419992717No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6320.1055518256123509No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6320.1055518256123509No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6030.10070846652570822No Hit

[OK]Adapter Content

Adapter graph