FastQCFastQC Report
Wed 31 May 2023
EGAF00007934817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences619372
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT119061.9222696537783432No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48150.7774003345323973No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30850.49808515722376856No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27060.43689414439141583No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23540.38006238577139423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22100.3568130299722945No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18550.29949690977312504No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC18060.2915856706470425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17200.27770063871146905No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15560.2512222057180499No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14610.23588408904503272No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14330.23136338097298556No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13880.22409795728576687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13760.22216051096917525No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13680.22086888009144748No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC13380.21602526429996835No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11240.18147413832075068No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11190.18066686902217083No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG10090.1629069444534141No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9580.15467279760789962No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9540.15402698216903574No Hit
CAGCAGGACGTCAAAAACCGCCGCAACCCGC8890.14353248128749765No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8800.14207939655005392No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7900.1275485491756166No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7860.12690273373675273No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA7580.12238202566470555No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7460.12044457934811391No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7180.11592387127606672No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7020.1133406095206112No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6870.11091880162487164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.10962717074714388No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6780.10946571688742791No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6370.10284610863907312No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.10187738548077731No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6220.10042430074333358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)