FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548412
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17790.3243911511783112No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17300.3154562628097124No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15540.2833636025469902No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12510.22811317039014462No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12370.22556034514197354No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12340.22501331116022263No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10430.1901854809887457No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9550.1741391508573846No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9310.16976287900337703No Hit
ACCGATACGTTTGCCAGAATCACGGATGAATTTGCGGGTCACTG7740.14113476729174418No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7470.13621146145598564No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7060.12873533037205603No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6580.1199827866640409No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6540.11925340802170631No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6420.11706527209470252No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6330.1154241701494497No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6100.11123024295602577No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5890.10740100508376912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)