FastQCFastQC Report
Sun 21 May 2023
EGAF00007934819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548412
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47350.863401967863577No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18650.340072791988505No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG17880.32603225312356404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15060.2746110588389751No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14470.2638527238645398No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14170.25838238404703034No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13340.24324777721858748No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12320.22464862183905532No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11090.20222022858726652No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10470.1909148596310803No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10360.18890906836466015No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9620.17541556348147014No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8640.15754578674427255No Hit
GTTGCTAAAGTTCAGGCAGAACGTTCCCAGG8270.15079903430267755No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7410.13511739349248375No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6690.12198857793046104No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6680.1218062332698774No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6610.12052982064579185No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6580.1199827866640409No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6550.11943575268228995No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6250.1139654128647805No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6100.11123024295602577No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6080.11086555363485848No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6070.11068320897427483No Hit

[OK]Adapter Content

Adapter graph