FastQCFastQC Report
Sun 21 May 2023
EGAF00007934822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546774
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19640.35919776726764624No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17990.3290207654350792No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17290.3162184010212629No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14690.2686667617699452No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14580.266654961647774No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13180.2410502328201414No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11900.21764019503487728No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11220.20520361246145574No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10540.19276702988803418No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT10130.18526850215994178No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA9910.1812449019155995No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9810.17941599271362574No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9510.17392926510770446No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9130.16697941014020418No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8410.15381126388599312No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8400.15362837296579573No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7220.13204724438250537No Hit
CTGACGGCCAACACGGCCACGGCGCTGTGCGGCAGACGCGGTAG7050.12893809873915002No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6690.12235402561204448No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6450.11796464352730744No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6160.11266080684158354No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6140.11229502500118879No Hit
AATGTTGGTGCGGCCATCGATAACACGGGACACGTCCAGGTTTG5850.10699118831546488No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5690.10406493359230687No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5490.10040711518835936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)