FastQCFastQC Report
Wed 31 May 2023
EGAF00007934823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546774
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35720.6532863669450267No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26770.48959899336837526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18070.3304838927966582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17150.31365792813849963No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16020.2929912541561962No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15680.2867729628694854No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14650.26793519808915567No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12830.23464905061323324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11390.20831275810481112No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10610.1940472663294158No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT10260.18764608412250766No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG9910.1812449019155995No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.17795286535204674No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9630.17612395615007298No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9550.17466082878849395No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9270.16953988302296744No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9260.16935699210277008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8810.16112690069388816No Hit
CGTGACGAGAAACCGGACTTCGTTGTAACCA7090.1296696624199395No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6610.12089089825046545No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6590.1205251164100707No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6580.12034222548987332No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6340.11595284340513631No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6170.11284369776178092No Hit
CGCCAGAAGGGTAAAAGCGTAATCTGCCTGA5970.10918587935783339No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5910.10808853383664915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)