FastQCFastQC Report
Wed 31 May 2023
EGAF00007934825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532889
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37770.7087780006718096No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22520.42260208035819846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10580.19854040897822997No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10120.18990821728352433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9560.17939946217692615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9460.1775228987650336No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5680.10658880179549587No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5390.10114676790100752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)